A disruption to a system housing United Airlines’ flight information that caused more than 1,000 delays has been resolved, but delays continued into Thursday.

The impacted system, called Unimatic, houses flight information that is fed to other systems including those that calculate weight and balance and track flight times, according to United. It’s not clear what caused the problem, which was resolved late Wednesday. While residual delays were expected, the Chicago-based airline said its team was working to restore normal operations.

About 35% of all the airline’s flights were delayed and 7% were canceled Wednesday, according to FlightAware, a website that tracks flight disruptions. By late Thursday morning local Chicago time, 9% of United flights for the day were delayed and 5% were canceled. Around the same time, FlightAware reported 42 cancellations at Chicago O’Hare International Airport — 41 of which were United flights.

An alert on the Federal Aviation Administration website Wednesday said all United flights destined for Chicago were halted at their departing airports. Flights to United hubs at Denver, Newark, Houston and San Francisco airports also were affected.

United’s travel alert page noted flights to or from several U.S. airports could be affected still on Thursday, including in Denver, Newark, Washington, Houston, New York, Los Angeles, Orlando, Chicago, San Francisco, Honolulu and Guam and some in Europe, such as London, Frankfurt and Munich. It was an improvement from earlier in the day, when the alert page said flights through Sunday might be impacted.

“Safety is our top priority, and we’ll work with our customers to get them to their destinations,” an emailed statement from the airline said.

The system outage, as the company described it, lasted several hours, the statement said. It wasn’t related to recent concerns about airline industry cybersecurity. United said it was treating it as a controllable delay, meaning it paid customer expenses such as hotels when applicable.

In an interview, United Airlines passenger Benjamin Fuentes, who flew from Boston to Houston, told KTRK-TV that they were told they would be waiting for a while after the plane landed.

“The first hour, people were already standing up and just walking around the cabin because there was nothing to do,” he said. “I got on Netflix.”

After about an hour, they were told the system was down nationwide, he said. Eventually, they learned that they found a gate, but it took another 45 minutes before they got there, he said.

The FAA said in a statement Thursday that it was aware of the disruption to United operations, noting that delays may continue as the airline recovers.

“We’ve offered full support to help address their flight backlog and remain in close contact with United,” the FAA said.

United Airlines apologized on social media and said in some cases it would pay for hotel and other expenses incurred by travelers because of the delays.

“Hey there, we apologize for the travel disruption today,” the airline told a customer on the social platform X. “Our teams are working to resolve the outage as quickly as possible. Thank you for your patience.”

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Associated Press airlines writer Rio Yamat in Las Vegas contributed.